PoplarV1, Main, Exploration, bibRecord, 003907

Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa.

Identifieur interne : 003907 ( Main/Exploration ); précédent : 003906; suivant : 003908

Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa.

Auteurs : Jing Zhuang [République populaire de Chine] ; Bin Cai ; Ri-He Peng ; Bo Zhu ; Xiao-Feng Jin ; Yong Xue ; Feng Gao ; Xiao-Yan Fu ; Yong-Sheng Tian ; Wei Zhao ; Yu-Shan Qiao ; Zhen Zhang ; Ai-Sheng Xiong ; Quan-Hong Yao

Source :

Biochemical and biophysical research communications [ 1090-2104 ] ; 2008.

RBID : pubmed:18442469

Descripteurs français

English descriptors

KwdEn :
- Amino Acid Sequence (MeSH), Arabidopsis (genetics), Cloning, Molecular (MeSH), Computational Biology (MeSH), Conserved Sequence (MeSH), Gene Expression Regulation, Plant (MeSH), Genome, Plant (MeSH), Phylogeny (MeSH), Plant Proteins (chemistry), Plant Proteins (classification), Plant Proteins (genetics), Populus (genetics), Protein Folding (MeSH), Sequence Analysis, Protein (MeSH), Transcription Factors (chemistry), Transcription Factors (classification), Transcription Factors (genetics).
MESH :
- chemical , chemistry : Plant Proteins, Transcription Factors.
- chemical , classification : Plant Proteins, Transcription Factors.
- genetics : Arabidopsis, Plant Proteins, Populus, Transcription Factors.
- Amino Acid Sequence, Cloning, Molecular, Computational Biology, Conserved Sequence, Gene Expression Regulation, Plant, Genome, Plant, Phylogeny, Protein Folding, Sequence Analysis, Protein.

Abstract

Populus is a model system for investigating the wood development, crown formation, and disease resistance in perennial plants. AR2/ERF is a large family of transcription factors in plant, encoding transcriptional regulators with a variety of functions involved in the developmental and physiological processes. Here, starting from database of Populus genome, we identified 200 AP2/ERF genes by in silico cloning method using the AP2/ERF conserved domain amino acid sequence of Arabidopsis thaliana as probe. Based on the number of AP2/ERF domains and the function of the genes, those AP2/ERF genes from Populus were classified into four subfamilies named the AP2, DREB, ERF, RAV, and a soloist. Among these genes, the number genes of total AP2/ERF family genes, DREB subfamily, and ERF subfamily from Populus trichocarpa were about 1.4-1.6-fold than those from A. thaliana. The rates were very similar for the putative homologs between Populus and Arabidopsis.

DOI: 10.1016/j.bbrc.2008.04.087
PubMed: 18442469

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 003905
to stream Main, to step Curation: 003905

Le document en format XML

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<term>Arabidopsis (genetics)</term>
<term>Cloning, Molecular (MeSH)</term>
<term>Computational Biology (MeSH)</term>
<term>Conserved Sequence (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Genome, Plant (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Proteins (chemistry)</term>
<term>Plant Proteins (classification)</term>
<term>Plant Proteins (genetics)</term>
<term>Populus (genetics)</term>
<term>Protein Folding (MeSH)</term>
<term>Sequence Analysis, Protein (MeSH)</term>
<term>Transcription Factors (chemistry)</term>
<term>Transcription Factors (classification)</term>
<term>Transcription Factors (genetics)</term>
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<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence de protéine (MeSH)</term>
<term>Arabidopsis (génétique)</term>
<term>Biologie informatique (MeSH)</term>
<term>Clonage moléculaire (MeSH)</term>
<term>Facteurs de transcription (classification)</term>
<term>Facteurs de transcription (composition chimique)</term>
<term>Facteurs de transcription (génétique)</term>
<term>Génome végétal (MeSH)</term>
<term>Phylogenèse (MeSH)</term>
<term>Pliage des protéines (MeSH)</term>
<term>Populus (génétique)</term>
<term>Protéines végétales (classification)</term>
<term>Protéines végétales (composition chimique)</term>
<term>Protéines végétales (génétique)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Séquence conservée (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
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<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Plant Proteins</term>
<term>Transcription Factors</term>
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<keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>Plant Proteins</term>
<term>Transcription Factors</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>Facteurs de transcription</term>
<term>Protéines végétales</term>
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<term>Protéines végétales</term>
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<term>Plant Proteins</term>
<term>Populus</term>
<term>Transcription Factors</term>
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<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arabidopsis</term>
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<term>Protéines végétales</term>
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<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Cloning, Molecular</term>
<term>Computational Biology</term>
<term>Conserved Sequence</term>
<term>Gene Expression Regulation, Plant</term>
<term>Genome, Plant</term>
<term>Phylogeny</term>
<term>Protein Folding</term>
<term>Sequence Analysis, Protein</term>
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<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence de protéine</term>
<term>Biologie informatique</term>
<term>Clonage moléculaire</term>
<term>Génome végétal</term>
<term>Phylogenèse</term>
<term>Pliage des protéines</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Séquence conservée</term>
<term>Séquence d'acides aminés</term>
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<front><div type="abstract" xml:lang="en">Populus is a model system for investigating the wood development, crown formation, and disease resistance in perennial plants. AR2/ERF is a large family of transcription factors in plant, encoding transcriptional regulators with a variety of functions involved in the developmental and physiological processes. Here, starting from database of Populus genome, we identified 200 AP2/ERF genes by in silico cloning method using the AP2/ERF conserved domain amino acid sequence of Arabidopsis thaliana as probe. Based on the number of AP2/ERF domains and the function of the genes, those AP2/ERF genes from Populus were classified into four subfamilies named the AP2, DREB, ERF, RAV, and a soloist. Among these genes, the number genes of total AP2/ERF family genes, DREB subfamily, and ERF subfamily from Populus trichocarpa were about 1.4-1.6-fold than those from A. thaliana. The rates were very similar for the putative homologs between Populus and Arabidopsis.</div>
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<name sortKey="Peng, Ri He" sort="Peng, Ri He" uniqKey="Peng R" first="Ri-He" last="Peng">Ri-He Peng</name>
<name sortKey="Qiao, Yu Shan" sort="Qiao, Yu Shan" uniqKey="Qiao Y" first="Yu-Shan" last="Qiao">Yu-Shan Qiao</name>
<name sortKey="Tian, Yong Sheng" sort="Tian, Yong Sheng" uniqKey="Tian Y" first="Yong-Sheng" last="Tian">Yong-Sheng Tian</name>
<name sortKey="Xiong, Ai Sheng" sort="Xiong, Ai Sheng" uniqKey="Xiong A" first="Ai-Sheng" last="Xiong">Ai-Sheng Xiong</name>
<name sortKey="Xue, Yong" sort="Xue, Yong" uniqKey="Xue Y" first="Yong" last="Xue">Yong Xue</name>
<name sortKey="Yao, Quan Hong" sort="Yao, Quan Hong" uniqKey="Yao Q" first="Quan-Hong" last="Yao">Quan-Hong Yao</name>
<name sortKey="Zhang, Zhen" sort="Zhang, Zhen" uniqKey="Zhang Z" first="Zhen" last="Zhang">Zhen Zhang</name>
<name sortKey="Zhao, Wei" sort="Zhao, Wei" uniqKey="Zhao W" first="Wei" last="Zhao">Wei Zhao</name>
<name sortKey="Zhu, Bo" sort="Zhu, Bo" uniqKey="Zhu B" first="Bo" last="Zhu">Bo Zhu</name>
</noCountry>
<country name="République populaire de Chine"><noRegion><name sortKey="Zhuang, Jing" sort="Zhuang, Jing" uniqKey="Zhuang J" first="Jing" last="Zhuang">Jing Zhuang</name>
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   |texte=   Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa.
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Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa.

Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa.

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